Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015937106.1_cds_XP_016482468.1_73692
CDS Infomation

[gene=LOC107803294] [db_xref=GeneID:107803294] [protein=auxilin-related protein 2-like] [protein_id=XP_016482468.1] [location=join(19472..20064,22899..24564,24671..24818,25228..25325,25457..25522,26539..26628,27183..27359,27968..28006)] [gbkey=CDS]
Sequence

ATGGACGATCTCGATGTGCTGGCTCGAGACTTCGGGTTCAAACCCGCCGGAAAATCAGCT
CCCATGAGATCCGACGGTGGAGATCGCCGCTCCTCTTCCGTCCGATCATCAAACTCTTCA
CCATTGTTCGATGATCCTGATAGTCTATTATACAAAGATGTCTTCACAAAATCTAGTAAT
AACAACAGTAAATACTCTTCAATGAGCGATTTCAATTACGATTCCATTTTCAAATCCGAT
TCGAATAGCAACAAGAACCACAATAACAACAACAAAACGTCGTCGTTGCCGGTGTACGAC
AAGCCAGTGTACGACGAGGATATTTTCGATGGATTGCCAGGACTGAAGAGCAAATCGGTA
ACCGAAAAATCTGCATCCGCCGTGGGATTTGACGACGACGTTTTTGCTAAAATGACTTCG
CCTCCGCAACCAAAGCATAAAGACGATCACTTTGGTGATCTGCTGGGTAATTTGAAGGGG
AATGAGAAGAAGGTGACAGAGCCGAAGAATAGTACGAGCAGCTCGAGTGCCAGAGGGTTT
GATGATTTGTTAGCTGGTTTTGGGAGTAGCAGCACTTCCACCACTAATAAGAGGTCATTT
ACAGAGTCTAGTCAATACTCCAAACCCGCTGGAAATCCAAATCAAAGTTCTAGTGTGATG
GATGACCCTTTTGCAGGCTTAGGGTCAACTTCAATGGCGGCTTCGTCTTCCCCAGGGGAG
TTCATGGATCCACTTGAAGAGATTGGTCATCAGCTTGGTAAATCTGGAAATGCAAAATCT
GAAGCTTCATCGGTTAGTGGAGGAGGACTTGATGATTTAGATCCATTGAATGGTTTTAGT
AAGTCTGTCCCTCCGTTCTACCCTGCTAGGAATAATAGAGGGACGGAAGGGAGCCCTCAA
AGTGCAGGATCGGGAAGGAGCGACACACAAACCTCTACTTCTAGAGAAAACATTGGCAAA
TCATCTTCTAGATCTTCTGGTAGCCGCTCACAGAAAAAGGTGCCTGGGGATAGTTTTCAG
GACTCTCCTCTTTTTGACATGCCTTCAGCTGATCCTCGGAGATCTTTTGGTCAAGCTGCT
TCCCCTCCATATGCAAGTAGCAATATTCATGAAAGAAACTTTGAATCAGATACATCCCCA
AGATCAGAGGAACCTTCTGATGATGTATGGCTTTCTGTATCAGAGATTCCTCTTTTTACA
CAACCTACAAGAGCTCCACCTCCATCACGACCGCCACCTCCAATTCCACGGCGAAATATA
AAGTCAGATTCAAATGCAAGAAAGAAGGGTGACAGATATTCGTCTTCTCCAAGTTACAAT
CAACACTCTGAAAGTCCTAAACTTGCTCGTCCTGCAGCCAAGAGCGCTCCAATTTCACCG
TTGGATGAACTTGATGAATTTGCCATGGGTAGGTCTCCCCATAGTGTGGATGAAGGTGCA
GATATTCATTCTGGTGAAGATGTGAGTGCAAACTCAGTAGCTGCTGCATCTGCAGCTGCG
ATGAAGGAGGCTATGGATAGAGCTCAGGCCAAATTTAGACATGCTAAGGAAGTTCGAGAA
AGAGAATATGCAAAGGCAGCTAAGAGTATGGAGGCCGTAAACCTGGACAGGGAAGAACAA
GCCGTGCATGAGATGGAAGAAAAAGAACTGAGAGAAAACAAGGAGAGGTTAGAACGTGAA
CATCAACAGAGGGAAAAAGAAGAGGAAGAGAGAGCACAGCAGAAACTGGAGAGGGAGAGG
GAGAGGGAGAGAGCTAGGGAGATGGAAAGAGATAGGGGTAGGCAAGCTGTAGAAAGGGCT
ACTAGGGAAGCACGTGAAAGAGCAGCAGCAGAAGCTAGAGAAAGAGCTTCTGCTGATGCT
CGTTTGAAAACCGAAAGAGCTGCTGTGGAGAAGGCTGCAGCTGAAGCTCGAGAACGGGCT
GAAAGGGCTGCGGTTCAGCGAGCACAAGCAGAAGCACGTGAAAGAGCTGCAGCAGAAGCT
AGAGACAGAGCACAAAAGGCAGCTGCTGAAGCAAGGGAAAAAGAAGCACGTGAAAAAGCT
TCAGCTGCAAAAGTTGAGGCTGAGGCAAGACGTCGAGCAGAACGAGCTGCTGTAGAAAGG
GCTGCTGCAGAGGCTCGGGAAAGGGCAGCTGCAGAGGCTCGAGAAAGGGCTGCTGCTGCT
GCAAGGATGAACCAGCAAAAGAATGACGATGATCTTGAATCCTTTTTTAATATGGGTTCT
AGAGCCAACAGTGCACCAAAGACAAGAACAAGTTCTTCTGAGACTTCATTTGCTTCACAG
TTCCAGAACAAGGCAGGTCCGGAAGGGCCAAAGGCAACATTCTCATCTACTACAACCTCC
TCCAACAGGACAAAGGCATCTTCATCAACTACGAGTATTGTTGATGATCTCTCTTCAATT
TTTGGAGCTGCCACATCATCTGGAGATTTCCAAGATGTTGAAGGGGAAACAGAAGAAAGA
AGAAGAGCTAGACTAGAACGCCATCAACGAACTCAGGAGCGTGCGGCCAAAGCTTTGGCG
GAAAAGAATCAGCGTGACCTTCAAGTTCAGAGGGAGCAGGAAGAAAGACATAGAATCGGT
GAGACCCTAGATTTTGAAATCAAGCGGTGGGCTGCTGGGAAAGAAGGAAATCTGCGTGCA
CTGCTATCAACTCTGCAATATGTGCTTTGGCCTGAATGCGGTTGGCAGCCGGTTTCTTTG
ACGGATTTGATTACTGGTGCTTCTGTGAAGAAGGTATATAGAAAAGCGACATTGTGTATC
CATCCCGATAAGGTGCAGCAGAAAGGCGCCACCCTTCAACAGAAATATATTGCGGAGAAG
GTGTTTGACATGCTCAAGGAAGCATGGAACAAATTCAACTCAGAGGAGCTTTTCTAG

Peptide Sequence

PEP ID

XP_016482468.1
PEP Infomation

PREDICTED: auxilin-related protein 2-like [Nicotiana tabacum]
Sequence

MDDLDVLARDFGFKPAGKSAPMRSDGGDRRSSSVRSSNSSPLFDDPDSLLYKDVFTKSSN
NNSKYSSMSDFNYDSIFKSDSNSNKNHNNNNKTSSLPVYDKPVYDEDIFDGLPGLKSKSV
TEKSASAVGFDDDVFAKMTSPPQPKHKDDHFGDLLGNLKGNEKKVTEPKNSTSSSSARGF
DDLLAGFGSSSTSTTNKRSFTESSQYSKPAGNPNQSSSVMDDPFAGLGSTSMAASSSPGE
FMDPLEEIGHQLGKSGNAKSEASSVSGGGLDDLDPLNGFSKSVPPFYPARNNRGTEGSPQ
SAGSGRSDTQTSTSRENIGKSSSRSSGSRSQKKVPGDSFQDSPLFDMPSADPRRSFGQAA
SPPYASSNIHERNFESDTSPRSEEPSDDVWLSVSEIPLFTQPTRAPPPSRPPPPIPRRNI
KSDSNARKKGDRYSSSPSYNQHSESPKLARPAAKSAPISPLDELDEFAMGRSPHSVDEGA
DIHSGEDVSANSVAAASAAAMKEAMDRAQAKFRHAKEVREREYAKAAKSMEAVNLDREEQ
AVHEMEEKELRENKERLEREHQQREKEEEERAQQKLERERERERAREMERDRGRQAVERA
TREARERAAAEARERASADARLKTERAAVEKAAAEARERAERAAVQRAQAEARERAAAEA
RDRAQKAAAEAREKEAREKASAAKVEAEARRRAERAAVERAAAEARERAAAEARERAAAA
ARMNQQKNDDDLESFFNMGSRANSAPKTRTSSSETSFASQFQNKAGPEGPKATFSSTTTS
SNRTKASSSTTSIVDDLSSIFGAATSSGDFQDVEGETEERRRARLERHQRTQERAAKALA
EKNQRDLQVQREQEERHRIGETLDFEIKRWAAGKEGNLRALLSTLQYVLWPECGWQPVSL
TDLITGASVKKVYRKATLCIHPDKVQQKGATLQQKYIAEKVFDMLKEAWNKFNSEELF

Transcript Sequence

Gene sequence data has not been registered.